Equidae

Horses and donkeys have never been shown in a Fallout game, but have been mentioned on occasion.

Background
Some equidae survived the Great War, living a short period of time before becoming extinct in just under or over a century.

Post-War

 * One such case is Pugsley, a donkey owned by a man named Irwin who was killed when his ranch was attacked by raiders around 2161. As this was 84 years after the Great War and donkeys do not live longer than 50 years under even the best circumstances, it is probable that small populations survived on a domesticated basis.
 * Dane, one of the Children of the Cathedral, will mention horses in his insane ramblings.
 * The Chosen One when talking to Ethyl Wright however mentions the abundance of mare's milk being around among tribesmen.
 * In the graphic novel All Roads, an NCR soldier seen in Chance's flashback of the Bitter Springs Massacre is riding a horse. However, given as the animals are seen in a chem fueled fever dream, the content is unreliable, and Chris Avellone later disregarded their appearance.
 * In the Fallout: New Vegas add-on Honest Hearts, the war clubs used by the Dead Horses have been carved into the shape of a horse head.
 * There is a drawing of a horse, chicken and cow used in a framed picture near Bunker Hill in Fallout 4. The same drawing appears at an unmarked trapper outpost northwest of the MS Azalea, in the add-on Far Harbor.
 * Scout Leader Jaggy also laments about missing the sight of horses in Appalachia.
 * A "Horse Marker" can be found in the G.E.C.K.
 * Horses are referenced in the description of the Ol' Painless weapon in Fallout Shelter.
 * There is a book entitled Pretty Pretty Horsies: A History of the Mongol Empire available in Fallout: New Vegas. It is a quest item for convincing the Great Khans to break their alliance with Caesar's Legion, by revealing the history of their namesake ancestors.