Human Error

Human Error is a quest in Fallout 4.

Quick walkthrough
Enter Covenant and talk to Honest Dan

Find the caravan wreckage north east of Covenant on the road to recover Deezer's Lemonade.

Either explore the files on Jacob's computer OR transversely, with a skill in luck of 9 or higher, fix the radio in the shop owners house at the far end of town OR charm Penny Fitzgerald into running her mouth.

Find the compound (next to the fishing area in a sewer)

Fight through the guards and get to the doctor, or pass a speech check and be escorted peacefully.

Either release Amelia or Agree that she might be a synth and leave the doctor with her

An alternate way to start the quest is to simply enter the sewer and follow the three previous steps.

Upon choosing wether to spare or leave Amelia, the quest is completed.

Detailed walkthrough
The fishing spot is the location of the compound. The entrance is through the door in the middle pipe down in the water.

Places to investigate:

Bookcase in the center house just inside the door. Sleeping bag between Jacob Ogden's house and the guest house. One can learn about the existence of the compound from the store owner Peggy with a Charisma check.

If told Honest Dan about the compound, he's waiting inside the outer door. He agrees to follow, but if the Sole Survivor accepts the compound's deal to let them kill Amelia, he'll become hostile.